Update some dependency versions that allow better licensing

With the new resolver, a few dependencies get brought in twice with
different licenses. For example, all dependencies from `wasm-tools`
gained Apache-2.0 and MIT options, and with the v2 resolver we were
using one version from before and one version from after this change.
This made tidy's license check difficult.

Update some minimum versions to remove duplicate dependencies and smooth
out license checking.

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