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`prep.js` outputs its own HTML directives, which `pandoc` cannot
recognize when converting the document into LaTeX (this is why the
PDF docs have never been highlighted as of now).
Note that if we were to add the `.rust` class to snippets, we could
probably use pandoc's native highlighting capatibilities i.e. Kate.
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This continues to generate all documentation into doc, but it now looks for
source files in src/doc
Closes #11860
Closes #11970
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We generate documentation into the doc/ directory, so we shouldn't be
intermingling source files with generated files
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